R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
Brundle
View on CRAN: Click
here
Download and install Brundle package within the R console
Install from CRAN:
install.packages("Brundle")
Install from Github:
library("remotes")
install_github("cran/Brundle") Install by package version:
library("remotes")
install_version("Brundle", "1.0.9") Attach the package and use:
library("Brundle")
Maintained by
Andrew N Holding
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-09-19
Latest Update:
Description:
Inter-sample condition variability is a key challenge of normalising ChIP-seq data. This implementation uses either spike-in or a second factor as a control for normalisation. Input can either be from 'DiffBind' or a matrix formatted for 'DESeq2'. The output is either a 'DiffBind' object or the default 'DESeq2' output. Either can then be processed as normal. Supporting manuscript Guertin, Markowetz and Holding (2017) .
How to cite:
Andrew N Holding (2017). Brundle: Normalisation Tools for Inter-Condition Variability of ChIP-Seq
Data. R package version 1.0.9, https://cran.r-project.org/web/packages/Brundle. Accessed 20 Aug. 2026.
Previous versions and publish date:
Other packages that cited Brundle R package
View Brundle citation profile
Other R packages that Brundle depends,
imports, suggests or enhances
Functions, R codes and Examples using
the Brundle R package
Some associated functions: Brundle . dbaControl . dbaExperiment . jg.applyNormalisation . jg.conditions . jg.controlCountsTreated . jg.controlCountsUntreated . jg.controlPeaks . jg.controlPeakset . jg.controlPeaksetDeSeq . jg.controlResultsDeseq . jg.convertPeakset . jg.correctDBASizeFactors . jg.countAlignedMReads . jg.dbaGetPeakset . jg.experimentPeakset . jg.experimentResultsDeseq . jg.getControlCounts . jg.getCorrectionFactor . jg.getDba . jg.getNormalizationCoefficient . jg.getSampleIds . jg.plotDeSeq . jg.plotDeSeqCombined . jg.plotMA . jg.plotNormalization . jg.runDeSeq .
Some associated R codes: brundle-data.R . brundle.R . Full Brundle package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
rfishbase
A programmatic interface to 'FishBase', re-written
based on an accompanying 'RESTful' API. Access t ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Carl Boettiger (view profile)
ggtea
A collection of palettes and themes for 'ggplot2', offering a light, pastel aesthetic. Syntax follow ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pushkar Sarkar (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
Brundle
Inter-sample condition variability is a key challenge of normalising ChIP-seq data. This implementat ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Andrew N Holding (view profile)
matlabr
Provides users to call MATLAB from using the "system" command.
Allows users to submit lines of code ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: John Muschelli (view profile)
mapaccuracy
Unbiased estimators of overall and per-class thematic map accuracy and area published in Olofsson et ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Hugo Costa (view profile)
28,313
R Packages
239,283
Dependencies
75,034
Author Associations
28,314
Publication Badges
