jg.getCorrectionFactorR Documentation

jg.getCorrectionFactor

Description

Generates a correction factor that is applied before reinserting the data into the DiffBind object for analysis.

Usage

jg.getCorrectionFactor(jg.experimentSampleSheet, jg.treatedNames,
  jg.untreatedNames)

Arguments

jg.experimentSampleSheet

is the csv samplesheet used to load the data into DiffBind

jg.treatedNames

is a list of the names of samples that are treated

jg.untreatedNames

is a list of the names of samples that are untreated

Examples

data(jg.controlCountsTreated, package="Brundle")
data(jg.controlCountsUntreated, package="Brundle")
jg.coefficient<-jg.getNormalizationCoefficient(jg.controlCountsTreated, jg.controlCountsUntreated)