jg.getNormalizationCoefficientR Documentation

jg.getNormalizationCoefficient

Description

This function allows the user to caryy out the normalisation and returns a coefficient by using a linear fit to the control data.

Usage

jg.getNormalizationCoefficient(jg.controlCountsTreated,
  jg.controlCountsUntreated)

Arguments

jg.controlCountsTreated

Control counts extracted from the Diffbind object for the treated condition using jg.getControlCounts

jg.controlCountsUntreated

Control ounts extracted from the Diffbind object for the untreated condition using jg.getControlCounts

Examples

data(jg.controlCountsTreated, package="Brundle")
data(jg.controlCountsUntreated, package="Brundle")
jg.coefficient<-jg.getNormalizationCoefficient(jg.controlCountsTreated,
                                                  jg.controlCountsUntreated)