Other packages > Find by keyword >

scrime  

Analysis of High-Dimensional Categorical Data Such as SNP Data
View on CRAN: Click here


Download and install scrime package within the R console
Install from CRAN:
install.packages("scrime")

Install from Github:
library("remotes")
install_github("cran/scrime")

Install by package version:
library("remotes")
install_version("scrime", "1.3.5")



Attach the package and use:
library("scrime")
Maintained by
Holger Schwender
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2008-01-16
Latest Update: 2018-12-01
Description:
Tools for the analysis of high-dimensional data developed/implemented at the group "Statistical Complexity Reduction In Molecular Epidemiology" (SCRIME). Main focus is on SNP data. But most of the functions can also be applied to other types of categorical data.
How to cite:
Holger Schwender (2008). scrime: Analysis of High-Dimensional Categorical Data Such as SNP Data. R package version 1.3.5, https://cran.r-project.org/web/packages/scrime. Accessed 16 May. 2025.
Previous versions and publish date:
1.0.0 (2008-01-16 10:15), 1.0.7 (2009-01-09 20:21), 1.1.2 (2009-01-27 17:41), 1.1.4 (2009-05-11 20:49), 1.1.6 (2009-05-19 21:09), 1.1.7 (2009-10-14 11:34), 1.1.9 (2009-11-01 17:17), 1.2.0 (2010-04-28 09:26), 1.2.1 (2010-07-29 11:14), 1.2.5 (2011-03-29 20:21), 1.2.6 (2011-06-09 08:04), 1.2.8 (2011-11-02 18:26), 1.2.9 (2012-10-03 12:21), 1.3.2 (2013-03-14 07:27), 1.3.3 (2013-09-02 00:22)
Other packages that cited scrime R package
View scrime citation profile
Other R packages that scrime depends, imports, suggests or enhances
Complete documentation for scrime
Functions, R codes and Examples using the scrime R package
Some associated functions: abf . analyse.models . buildSNPannotation . colEpistatic . computeContCells . computeContClass . fblr . gknn . identifyMonomorphism . knncatimpute . knncatimputeLarge . pamCat . pcc . predict.pamCat . predictFBLR . recodeAffySNP . recodeSNPs . rowCATTs . rowChisq2Class . rowChisqStats . rowCors . rowFreqs . rowHWEs . rowMAFs . rowMsquares . rowScales . rowTables . rowTrendFuzzy . rowTrendStats . scrime-internal . shortenGeneDescription . showChanges . simulateSNPcatResponse . simulateSNPglm . simulateSNPs . smc . snp2bin . summary.simSNPglm . 
Some associated R codes: abf.R . analyse.models.R . buildSNPannotation.R . buildSNPmat.R . canberra2Mats.R . check4Monomorphism.R . checkATCG.R . checkCatMat.R . checkDist.R . checkDistMat.R . checkMatSNP.R . checkTableList.R . checkX1X2.R . chisqClass2.R . chisqInd.R . cohen.R . cohen2Mats.R . colEpistatic.R . compChisqPval.R . compVarLevs.R . computeContCells.R . computeContClass.R . constructMatCheck.R . constructMatIA.R . dist2Mats.R . euclidean2Mats.R . evalRedundancy.R . fblr.R . fblr.weight.R . getBinDomRec.R . getBinGenotype.R . getCall.R . getDistance.R . getListIdentity.R . getMatFuzzy.R . getResponse.R . gknn.R . ia.samp.R . identifyMonomorphism.R . knncatimpute.R . knncatimputeLarge.R . manhattan2Mats.R . maximum2Mats.R . mc2Mats.R . minkowski2Mats.R . minrc.R . minrc2Mats.R . modeDist.R . pamCat.R . pcc.R . pcc2Mats.R . predict.pamCat.R . predictFBLR.R . print.pamCat.R . print.simSNPcatResponse.R . print.simSNPglm.R . print.simulatedSNPs.R . recodeAffySNP.R . recodeCount.R . recodeFirst.R . recodeNoHete.R . recodeSNPs.R . removeRedundancy.R . replaceNAs.R . row2col.R . rowCATTs.R . rowChisq2Class.R . rowChisqMultiClass.R . rowChisqStats.R . rowCors.R . rowFreqs.R . rowHWEs.R . rowMAFs.R . rowMsquares.R . rowScales.R . rowTables.R . rowTrendFuzzy.R . rowTrendStats.R . sample.snpmat.R . showChanges.R . simulateSNPcatResponse.R . simulateSNPglm.R . simulateSNPs.R . smc.R . smc2Mats.R . snp1norm2Mats.R . snp2bin.R . summary.simSNPglm.R . weightMode.R .  Full scrime package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
barcode  
Render Barcode Distribution Plots
The function \code{barcode()} produces a histogram-like plot of a distribution that shows granular ...
Download / Learn more Package Citations See dependency  
ContRespPP  
Predictive Probability for a Continuous Response with an ANOVA Structure
A Bayesian approach to using predictive probability in an ANOVA construct with a continuous normal ...
Download / Learn more Package Citations See dependency  
microbats  
An Implementation of Bat Algorithm in R
A nature-inspired metaheuristic algorithm based on the echolocation behavior of microbats that uses ...
Download / Learn more Package Citations See dependency  
scrime  
Analysis of High-Dimensional Categorical Data Such as SNP Data
Tools for the analysis of high-dimensional data developed/implemented at the group "Statistical Com ...
Download / Learn more Package Citations See dependency  
dagwood  
DAGs with Omitted Objects Displayed (DAGWOOD)
DAGs With Omitted Objects Displayed (DAGWOOD) is a framework to help reveal key hidden assumptions i ...
Download / Learn more Package Citations See dependency  

24,223

R Packages

207,311

Dependencies

65,402

Author Associations

24,224

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA