Other packages > Find by keyword >

convertid  

Convert Gene IDs Between Each Other and Fetch Annotations from Biomart
View on CRAN: Click here


Download and install convertid package within the R console
Install from CRAN:
install.packages("convertid")

Install from Github:
library("remotes")
install_github("cran/convertid")

Install by package version:
library("remotes")
install_version("convertid", "0.1.8")



Attach the package and use:
library("convertid")
Maintained by
Vidal Fey
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-08-21
Latest Update: 2021-09-13
Description:
Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the 'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes" can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol() attempts to determine the most likely current Gene Symbol.
How to cite:
Vidal Fey (2021). convertid: Convert Gene IDs Between Each Other and Fetch Annotations from Biomart. R package version 0.1.8, https://cran.r-project.org/web/packages/convertid. Accessed 30 Jan. 2025.
Previous versions and publish date:
0.1.1 (2021-08-21 11:30), 0.1.2 (2021-09-02 21:00), 0.1.3 (2021-09-13 11:20), 0.1.5 (2023-10-05 02:10), 0.1.6 (2023-10-06 16:30), 0.1.7 (2023-11-04 17:50)
Other packages that cited convertid R package
View convertid citation profile
Other R packages that convertid depends, imports, suggests or enhances
Complete documentation for convertid
Functions, R codes and Examples using the convertid R package
Some associated functions: convert.alias . convert.bm . convertId2 . convertid . dot-cache.writable . dot-create.cache . dot-get.Ensembl_config . dot-get.httr_config . dot-setCacheLocation . get.bm . likely_symbol . todisp2 . 
Some associated R codes: biomart.R . convertId2.R . get_symbol_aliases.R . unexported.R .  Full convertid package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

cinaR  
A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data analyses. This package combi ...
Download / Learn more Package Citations See dependency  
WtTopsis  
Weighted Method for Multiple-Criteria Decision Making
Evaluation of alternatives based on multiple criteria using weighted technique for Order preference ...
Download / Learn more Package Citations See dependency  
fastmit  
Fast Mutual Information Based Independence Test
A mutual information estimator based on k-nearest neighbor method proposed by A. Kraskov, et al. (20 ...
Download / Learn more Package Citations See dependency  
kesernetwork  
Visualization of the KESER Network
A shiny app to visualize the knowledge networks for the code concepts. Using co-occurrence matrices ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
convertid  
Convert Gene IDs Between Each Other and Fetch Annotations from Biomart
Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in conve ...
Download / Learn more Package Citations See dependency  

23,580

R Packages

204,057

Dependencies

63,980

Author Associations

23,581

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA