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aroma.apd
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Download and install aroma.apd package within the R console
Install from CRAN:
install.packages("aroma.apd")
Install from Github:
library("remotes")
install_github("cran/aroma.apd") Install by package version:
library("remotes")
install_version("aroma.apd", "0.7.1") Attach the package and use:
library("aroma.apd")
Maintained by
Henrik Bengtsson
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First Published: 2009-06-14
Latest Update: 2025-04-06
Description:
DEPRECATED. Do not start building new projects based on this package. (The (in-house) APD file format was initially developed to store Affymetrix probe-level data, e.g. normalized CEL intensities. Chip types can be added to APD file and similar to methods in the affxparser package, this package provides methods to read APDs organized by units (probesets). In addition, the probe elements can be arranged optimally such that the elements are guaranteed to be read in order when, for instance, data is read unit by unit. This speeds up the read substantially. This package is supporting the Aroma framework and should not be used elsewhere.)
How to cite:
Henrik Bengtsson (2009). aroma.apd: A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]. R package version 0.7.1, https://cran.r-project.org/web/packages/aroma.apd. Accessed 05 Nov. 2026.
Previous versions and publish date:
(2026-07-09 07:18), 0.1.6 (2009-06-14 21:07), 0.1.7 (2009-10-19 08:53), 0.1.8 (2011-02-01 08:48), 0.2.0 (2011-07-24 07:15), 0.2.2 (2012-04-04 22:17), 0.2.3 (2012-07-03 08:54), 0.3.0 (2013-08-02 23:57), 0.4.0 (2013-09-23 16:10), 0.5.0 (2014-02-27 21:16), 0.6.0 (2015-02-25 00:49), 0.6.1 (2022-07-18 01:00), 0.7.0 (2023-06-23 13:40)
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Complete documentation for aroma.apd
Functions, R codes and Examples using
the aroma.apd R package
Some associated functions: Non-documented_objects . aroma.apd-package . cdfToApdMap . celToApd . createApd . findApdMap . gtypeCelToPQ . readApd . readApdHeader . readApdMap . readApdRectangle . readApdUnits . updateApd . updateApdHeader . updateApdUnits . writeApd . writeApdMap .
Some associated R codes: 000.R . 008.BioC.R . 999.NonDocumentedObjects.R . 999.package.R . cdfToApdMap.R . celToApd.R . createApd.R . findApdMap.R . gtypeCelToPQ.R . readApd.R . readApdHeader.R . readApdMap.R . readApdRectangle.R . readApdUnits.R . updateApd.R . updateApdHeader.R . updateApdUnits.R . writeApd.R . writeApdMap.R . zzz.R . Full aroma.apd package functions and examples
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