Other packages > Find by keyword >

PQLseq  

Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies
View on CRAN: Click here


Download and install PQLseq package within the R console
Install from CRAN:
install.packages("PQLseq")

Install from Github:
library("remotes")
install_github("cran/PQLseq")

Install by package version:
library("remotes")
install_version("PQLseq", "1.2.1")



Attach the package and use:
library("PQLseq")
Maintained by
Jiaqiang Zhu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-06-10
Latest Update: 2021-06-06
Description:
An efficient tool designed for differential analysis of large-scale RNA sequencing (RNAseq) data and Bisulfite sequencing (BSseq) data in the presence of individual relatedness and population structure. 'PQLseq' first fits a Generalized Linear Mixed Model (GLMM) with adjusted covariates, predictor of interest and random effects to account for population structure and individual relatedness, and then performs Wald tests for each gene in RNAseq or site in BSseq.
How to cite:
Jiaqiang Zhu (2018). PQLseq: Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies. R package version 1.2.1, https://cran.r-project.org/web/packages/PQLseq. Accessed 24 Apr. 2025.
Previous versions and publish date:
1.0 (2018-06-10 17:22), 1.1 (2018-08-06 06:20), 1.2 (2020-05-02 17:00)
Other packages that cited PQLseq R package
View PQLseq citation profile
Other R packages that PQLseq depends, imports, suggests or enhances
Complete documentation for PQLseq
Functions, R codes and Examples using the PQLseq R package
Some associated functions: ExampleBSseq . ExampleRNAseq . PQLseq-package . 
Some associated R codes: PQLseq.R . RcppExports.R . hello.R .  Full PQLseq package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

TeachHist  
A Collection of Amended Histograms Designed for Teaching Statistics
Statistics students often have problems understanding the relation between a random variable's true ...
Download / Learn more Package Citations See dependency  
PQLseq  
Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies
An efficient tool designed for differential analysis of large-scale RNA sequencing (RNAseq) data and ...
Download / Learn more Package Citations See dependency  
stratbr  
Optimal Stratification in Stratified Sampling
An Optimization Algorithm Applied to Stratification Problem.This function aims at constructing optim ...
Download / Learn more Package Citations See dependency  
rattle  
Graphical User Interface for Data Science in R
The R Analytic Tool To Learn Easily (Rattle) provides a collection of utilities functions for the d ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
clustMixType  
k-Prototypes Clustering for Mixed Variable-Type Data
Functions to perform k-prototypes partitioning clustering for mixed variable-type data according to ...
Download / Learn more Package Citations See dependency  

24,098

R Packages

207,311

Dependencies

65,069

Author Associations

24,099

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA