R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
MethEvolSIM
View on CRAN: Click
here
Download and install MethEvolSIM package within the R console
Install from CRAN:
install.packages("MethEvolSIM")
Install from Github:
library("remotes")
install_github("cran/MethEvolSIM")
Install by package version:
library("remotes")
install_version("MethEvolSIM", "0.1")
Attach the package and use:
library("MethEvolSIM")
Maintained by
Sara Castillo Vicente
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-04-18
Latest Update: 2024-04-18
Description:
DNA methylation is an epigenetic modification involved in genomic stability, gene regulation, development and disease. DNA methylation occurs mainly through the addition of a methyl group to cytosines, for example to cytosines in a CpG dinucleotide context (CpG stands for a cytosine followed by a guanine). Tissue-specific methylation patterns lead to genomic regions with different characteristic methylation levels. E.g. in vertebrates CpG islands (regions with high CpG content) that are associated to promoter regions of expressed genes tend to be unmethylated. 'MethEvolSIM' is a model-based simulation software for the generation and modification of cytosine methylation patterns along a given tree, which can be a genealogy of cells within an organism, a coalescent tree of DNA sequences sampled from a population, or a species tree. The simulations are based on an extension of the model of Grosser & Metzler (2020) <doi:10.1186/s12859-020-3438-5> and allows for changes of the methylation states at single cytosine positions as well as simultaneous changes of methylation frequencies in genomic structures like CpG islands.
How to cite:
Sara Castillo Vicente (2024). MethEvolSIM: Simulate DNA Methylation Dynamics on Different Genomic Structures along Genealogies. R package version 0.1, https://cran.r-project.org/web/packages/MethEvolSIM
Previous versions and publish date:
0.1 (2024-04-18 16:12)
Other packages that cited MethEvolSIM R package
View MethEvolSIM citation profile
Other R packages that MethEvolSIM depends,
imports, suggests or enhances
Functions, R codes and Examples using
the MethEvolSIM R package
Full MethEvolSIM package
functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
buildr
Working with reproducible reports or any other similar projects often require to run the script that ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jan Netik (view profile)
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
bulletr
Analyze bullet lands using nonparametric methods. We provide a reading routine for x3p files (see &l ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Eric Hare (view profile)
lgarch
Simulation and estimation of univariate and multivariate log-GARCH models. The main functions of the ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Genaro Sucarrat (view profile)
Deriv
R-based solution for symbolic differentiation. It admits user-defined function as well as function s ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Serguei Sokol (view profile)
22,086
R Packages
187,731
Dependencies
55,244
Author Associations
22,087
Publication Badges
© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns