prep_scan

Description

Prepare a GenomeScan for running. Does all the computations that need to be done exactly once per genome scan.

Value

an object of class GenomeScan

Examples

library(wISAM)

wgs <- GenomeScan$new(y = phenotype,
                      X = covariate_mat,
                      G = locus_list,
                      K = kinship_mat,
                      w = 1/se_mean_per_strain)

result <- wgs$prep_scan()