R: Get the recombination fraction for a sequence of markers...

get_rf_from_list

R Documentation

Get the recombination fraction for a sequence of markers given an object of class `mappoly.twopt` and a list containing the linkage phase configuration. This list can be found in any object of class `two.pts.linkage.phases`, in x$config.to.test$'Conf-i', where x is the object of class `two.pts.linkage.phases` and i is one of the possible configurations.

Description

Get the recombination fraction for a sequence of markers given an object of class mappoly.twopt and a list containing the linkage phase configuration. This list can be found in any object of class two.pts.linkage.phases, in x$config.to.test$'Conf-i', where x is the object of class two.pts.linkage.phases and i is one of the possible configurations.

Usage

get_rf_from_list(twopt, ph.list)

Arguments

`twopt`	an object of class `mappoly.twopt`
`ph.list`	a list containing the linkage phase configuration. This list can be found in any object of class `two.pts.linkage.phases`, in x$config.to.test$'Conf-i', where x is the object of class `two.pts.linkage.phases` and i is one of the possible configurations.

Value

a vector with the recombination fraction between markers present in ph.list, for that specific order.