Multilocus analysis using Hidden Markov Models (single parent, single phase)

Description

Multilocus analysis using Hidden Markov Models (single parent, single phase)

Usage

est_rf_hmm_single_one_parent(
  input.seq,
  input.ph.single,
  info.parent = 1,
  uninfo.parent = 2,
  rf.vec = NULL,
  global.err = 0,
  tol = 0.001,
  verbose = FALSE,
  ret.map.no.rf.estimation = FALSE
)

Arguments

Author(s)

Marcelo Mollinari, mmollin@ncsu.edu

Examples

  
    s <- make_seq_mappoly(solcap.dose.map[[1]])
    full.phase <- solcap.dose.map[[1]]$maps[[1]]$seq.ph
    P1.map <- est_rf_hmm_single_one_parent(s, full.phase, info.parent = 1, 
                                           uninfo.parent = 2)
    plot(P1.map)
    P2.map <- est_rf_hmm_single_one_parent(s, full.phase, info.parent = 2, 
                                           uninfo.parent = 1)
    plot(P2.map)
    plot_map_list(list(Atlantic = P1.map, B1829 = P2.map), , horiz = FALSE)