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ubms  

Bayesian Models for Data from Unmarked Animals using 'Stan'
View on CRAN: Click here


Download and install ubms package within the R console
Install from CRAN:
install.packages("ubms")

Install from Github:
library("remotes")
install_github("cran/ubms")

Install by package version:
library("remotes")
install_version("ubms", "1.2.7")



Attach the package and use:
library("ubms")
Maintained by
Ken Kellner
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-01-19
Latest Update: 2023-09-11
Description:
Fit Bayesian hierarchical models of animal abundance and occurrence via the 'rstan' package, the R interface to the 'Stan' C++ library. Supported models include single-season occupancy, dynamic occupancy, and N-mixture abundance models. Covariates on model parameters are specified using a formula-based interface similar to package 'unmarked', while also allowing for estimation of random slope and intercept terms. References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
How to cite:
Ken Kellner (2021). ubms: Bayesian Models for Data from Unmarked Animals using 'Stan'. R package version 1.2.7, https://cran.r-project.org/web/packages/ubms. Accessed 08 Jun. 2025.
Previous versions and publish date:
1.0.1 (2021-01-19 10:30), 1.0.2 (2021-02-02 01:10), 1.1.0 (2021-11-30 09:20), 1.2.2 (2022-11-10 18:20), 1.2.3 (2023-05-17 17:50), 1.2.4 (2023-05-25 16:40), 1.2.5 (2023-08-21 16:10), 1.2.6 (2023-09-11 20:50)
Other packages that cited ubms R package
View ubms citation profile
Other R packages that ubms depends, imports, suggests or enhances
Complete documentation for ubms
Functions, R codes and Examples using the ubms R package
Some associated functions: RSR . coef-ubmsFit-method . extract-ubmsFit-method . extract_log_lik . fitList-ubmsFit-method . fitted-ubmsFit-method . getY-ubmsFit-method . get_elapsed_time-ubmsFit-method . get_stancode-ubmsFit-method . gof . kfold-ubmsFit-method . loo-ubmsFit-method . modSel-ubmsFitList-method . names-ubmsFit-method . names-ubmsFitList-method . nsamples-ubmsFit-method . plot-ubmsFit-ANY-method . plot_effects-ubmsFit-method . plot_posteriors-ubmsFit-method . plot_residuals-ubmsFit-method . plot_spatial . posterior_linpred-ubmsFit-method . posterior_predict-ubmsFit-method . predict-ubmsFit-method . priors . projected . ranef-ubmsFit-method . residuals-ubmsFit-method . stan_colext . stan_distsamp . stan_multinomPois . stan_occu . stan_occuRN . stan_occuTTD . stan_pcount . sub-ubmsFit-character-missing-missing-method . sub-ubmsSubmodelList-character-missing-missing-method . summary-ubmsFit-method . traceplot-ubmsFit-method . turnover . ubms . ubmsFitList-extractors . waic-ubmsFit-method . 
Some associated R codes: RcppExports.R . colext.R . distsamp.R . fit.R . fitlist.R . fitted.R . gof.R . inputs.R . kfold.R . loglik.R . mb_chisq.R . missing.R . multinomPois.R . occu.R . occuRN.R . occuTTD.R . pcount.R . plot_effects.R . plot_posteriors.R . posterior_linpred.R . posterior_predict.R . predict.R . priors.R . ranef.R . residuals.R . response.R . spatial.R . stanmodels.R . submodel.R . test-helpers.R . ubms-package.R . ubmsFit-methods.R . ubmsFitList-methods.R . umf.R . utils.R .  Full ubms package functions and examples
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