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tigger  

Infers Novel Immunoglobulin Alleles from Sequencing Data
View on CRAN: Click here


Download and install tigger package within the R console
Install from CRAN:
install.packages("tigger")

Install from Github:
library("remotes")
install_github("cran/tigger")

Install by package version:
library("remotes")
install_version("tigger", "1.1.0")



Attach the package and use:
library("tigger")
Maintained by
Susanna Marquez
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-06-08
Latest Update: 2023-10-10
Description:
Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>, Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.
How to cite:
Susanna Marquez (2016). tigger: Infers Novel Immunoglobulin Alleles from Sequencing Data. R package version 1.1.0, https://cran.r-project.org/web/packages/tigger. Accessed 21 Feb. 2025.
Previous versions and publish date:
0.2.5 (2016-06-08 10:07), 0.2.7 (2016-07-25 02:25), 0.2.8 (2016-08-28 16:20), 0.2.9.999 (2017-05-16 12:19), 0.2.10 (2017-07-03 12:00), 0.2.11 (2017-09-21 20:36), 0.3.0 (2018-10-03 23:50), 0.3.1 (2018-10-19 20:30), 0.4.0 (2019-07-19 07:40), 1.0.0 (2020-05-13 07:10), 1.0.1 (2022-09-20 23:50)
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