Other packages > Find by keyword >

qtl  

Tools for Analyzing QTL Experiments
View on CRAN: Click here


Download and install qtl package within the R console
Install from CRAN:
install.packages("qtl")

Install from Github:
library("remotes")
install_github("cran/qtl")

Install by package version:
library("remotes")
install_version("qtl", "1.70")



Attach the package and use:
library("qtl")
Maintained by
Karl W Broman
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2001-10-30
Latest Update: 2023-04-18
Description:
Analysis of experimental crosses to identify genes (called quantitative trait loci, QTLs) contributing to variation in quantitative traits. Broman et al. (2003) .
How to cite:
Karl W Broman (2001). qtl: Tools for Analyzing QTL Experiments. R package version 1.70, https://cran.r-project.org/web/packages/qtl. Accessed 16 Mar. 2025.
Previous versions and publish date:
0.85-4 (2001-10-30 12:12), 0.92-3 (2002-02-12 20:57), 0.96-5 (2002-09-30 23:04), 0.97-21 (2003-06-21 00:21), 0.97-22 (2004-01-02 16:22), 0.98-57 (2004-09-12 10:03), 0.99-22 (2005-04-26 11:08), 0.99-24 (2005-04-27 10:32), 1.00-15 (2005-09-03 21:44), 1.00-16 (2005-09-04 14:25), 1.00-17 (2005-09-07 17:27), 1.01-9 (2005-10-25 22:28), 1.02-26 (2006-06-08 12:52), 1.03-14 (2006-07-21 10:26), 1.04-52 (2006-10-28 12:42), 1.04-53 (2006-10-29 10:40), 1.05-2 (2006-11-09 11:13), 1.06-43 (2007-08-09 15:01), 1.07-11 (2007-09-21 17:22), 1.07-12 (2007-10-09 22:12), 1.08-55 (2008-04-03 18:28), 1.08-56 (2008-04-09 09:14), 1.09-43 (2008-07-20 11:09), 1.10-27 (2009-01-11 22:26), 1.11-12 (2009-03-29 16:55), 1.12-26 (2009-07-01 14:04), 1.13-7 (2009-09-10 22:15), 1.14-2 (2009-10-01 21:55), 1.15-15 (2010-05-02 19:26), 1.16-4 (2010-05-16 18:20), 1.16-6 (2010-05-25 17:58), 1.17-39 (2010-07-29 11:14), 1.18-7 (2010-08-18 20:21), 1.19-20 (2010-11-30 09:05), 1.20-15 (2011-02-23 10:33), 1.21-2 (2011-03-21 16:34), 1.22-21 (2011-11-29 07:57), 1.23-16 (2012-03-06 20:04), 1.24-9 (2012-05-25 19:13), 1.25-15 (2012-08-14 08:57), 1.26-13 (2012-11-27 15:03), 1.26-14 (2012-11-27 21:25), 1.27-10 (2013-04-11 16:56), 1.28-19 (2013-09-23 23:09), 1.29-2 (2013-12-09 17:08), 1.30-4 (2014-02-11 00:55), 1.31-9 (2014-03-20 07:39), 1.32-10 (2014-05-29 18:40), 1.33-7 (2014-08-12 20:20), 1.34-16 (2014-10-29 19:20), 1.34-17 (2014-10-30 21:22), 1.35-1 (2014-12-13 00:20), 1.35-3 (2014-12-16 04:26), 1.36-6 (2015-03-06 00:47), 1.37-11 (2015-08-25 19:21), 1.38-4 (2015-12-03 16:24), 1.39-5 (2016-03-04 17:34), 1.40-8 (2016-11-05 08:59), 1.41-6 (2017-06-12 08:01), 1.42-7 (2018-02-18 16:31), 1.42-8 (2018-02-19 20:40), 1.44-9 (2019-01-22 18:30), 1.45-11 (2020-02-02 17:40), 1.46-2 (2020-03-12 00:10), 1.47-9 (2021-01-07 22:30), 1.48-1 (2021-03-27 09:40), 1.50 (2021-10-06 18:00), 1.52 (2022-07-09 16:50), 1.54 (2022-12-02 01:20), 1.58 (2023-01-07 19:50), 1.60 (2023-04-18 22:40), 1.62 (2023-11-17 22:00), 1.66 (2023-11-27 21:40)
Other packages that cited qtl R package
View qtl citation profile
Other R packages that qtl depends, imports, suggests or enhances
Complete documentation for qtl
Functions, R codes and Examples using the qtl R package
Some associated functions: MQM . a.starting.point . add.cim.covar . add.threshold . addcovarint . addint . addloctocross . addmarker . addpair . addqtl . addtoqtl . allchrsplits . argmax.geno . arithscan . arithscanperm . badorder . bayesint . bristle3 . bristleX . c.cross . c.scanone . c.scanoneperm . c.scantwo . c.scantwoperm . calc.errorlod . calc.genoprob . calc.penalties . cbind.scanoneperm . cbind.scantwoperm . checkAlleles . chrlen . chrnames . cim . clean.cross . clean.scantwo . cleanGeno . comparecrosses . comparegeno . compareorder . condense.scantwo . convert.map . convert.scanone . convert.scantwo . convert2riself . convert2risib . convert2sa . countXO . drop.dupmarkers . drop.markers . drop.nullmarkers . dropfromqtl . droponemarker . effectplot . effectscan . est.map . est.rf . fake.4way . fake.bc . fake.f2 . fill.geno . find.flanking . find.marker . find.markerpos . find.pheno . find.pseudomarker . findDupMarkers . find_large_intervals . findmarkerindex . fitqtl . fitstahl . flip.order . formLinkageGroups . formMarkerCovar . geno.crosstab . geno.image . geno.table . getid . groupclusteredheatmap . hyper . inferFounderHap . inferredpartitions . interpPositions . jittermap . listeria . locateXO . locations . lodint . makeqtl . map10 . map2table . mapthis . markerlrt . markernames . max.scanPhyloQTL . max.scanone . max.scantwo . movemarker . mqmaugment . mqmautocofactors . mqmextractmarkers . mqmfind.marker . mqmgetmodel . mqmpermutation . mqmplotcircle . mqmplotcistrans . mqmplotclusteredheatmap . mqmplotcofactors . mqmplotdirectedqtl . mqmplotheatmap . mqmplotmultitrait . mqmplotpermutations . mqmplotsingletrait . mqmprocesspermutation . mqmscan . mqmscanall . mqmscanfdr . mqmsetcofactors . mqmtestnormal . multitrait . nchr . nind . nmar . nmissing . nphe . nqrank . nqtl . ntyped . nullmarkers . orderMarkers . phenames . pickMarkerSubset . plot.comparegeno . plot.cross . plot.errorlod . plot.geno . plot.info . plot.map . plot.missing . plot.pheno . plot.pxg . plot.qtl . plot.rf . plot.rfmatrix . plot.scanPhyloQTL . plot.scanone . plot.scanoneboot . plot.scanoneperm . plot.scantwo . plot.scantwoperm . plotLodProfile . plotModel . pull.argmaxgeno . pull.draws . pull.geno . pull.genoprob . pull.map . pull.markers . pull.pheno . pull.rf . qtl-internal . qtlversion . read.cross . readMWril . reduce2grid . refineqtl . reorderqtl . replace.map . replacemap.scanone . replacemap.scantwo . replaceqtl . rescalemap . ripple . scanPhyloQTL . scanone . scanoneboot . scanonevar.meanperm . scanonevar . scanonevar.varperm . scanqtl . scantwo . scantwopermhk . shiftmap . sim.cross . sim.geno . sim.map . simFounderSnps . simPhyloQTL . simulateMissingData . stepwiseqtl . strip.partials . subset.cross . subset.map . subset.scanone . subset.scanoneperm . subset.scantwo . subset.scantwoperm . summary.comparegeno . summary.cross . summary.fitqtl . summary.map . summary.qtl . summary.ripple . summary.scanPhyloQTL . summary.scanone . summary.scanoneboot . summary.scanoneperm . summary.scantwo . summary.scantwo.old . summary.scantwoperm . switch.order . switchAlleles . table2map . top.errorlod . totmar . transformPheno . tryallpositions . typingGap . write.cross . xaxisloc.scanone . 
Some associated R codes: add.cim.covar.R . add_threshold.R . addmarker.R . addqtl.R . argmax.geno.R . arithscan.R . bcsft.R . calc.genoprob.R . calc.pairprob.R . cim.R . comparegeno.R . compareorder.R . countXO.R . discan.R . droponemarker.R . effectplot.R . effectscan.R . errorlod.R . est.map.R . est.rf.R . find_large_intervals.R . fitqtl.R . fitstahl.R . inferFounderHap.R . interpPositions.R . makeqtl.R . map_construction.R . markerlrt.R . mqmaugment.R . mqmcircleplot.R . mqmcofactors.R . mqmpermutation.R . mqmplots.R . mqmprepare.R . mqmscan.R . mqmscanall.R . mqmsnow.R . mqmutil.R . phyloqtl_scan.R . phyloqtl_sim.R . phyloqtl_util.R . pickMarkerSubset.R . plot.R . plot.scanone.R . plot.scantwo.R . plotModel.R . plotperm.R . pull_stuff.R . qtlcart_io.R . read.cross.R . read.cross.csv.R . read.cross.csvs.R . read.cross.gary.R . read.cross.karl.R . read.cross.mm.R . read.cross.mq.R . read.cross.qtx.R . read.cross.tidy.R . readMWril.R . refineqtl.R . replacemap.R . ril48_reorg.R . ripple.R . scanone.R . scanoneboot.R . scanonevar.R . scanonevar.meanperm.R . scanonevar.varperm.R . scanqtl.R . scantwo.R . scantwopermhk.R . sim.geno.R . sim_ril.R . simulate.R . stepwiseqtl.R . stepwiseqtlX.R . summary.cross.R . summary.scanone.R . summary.scantwo.R . summary.scantwo.old.R . transformPheno.R . tryallpositions.R . util.R . vbscan.R . viridis.R . write.cross.R . write.cross.mq.R . write.cross.qtab.R . xchr.R .  Full qtl package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

latentFactoR  
Data Simulation Based on Latent Factors
Generates data based on latent factor models. Data can be continuous, polytomous, dichotomous, or mi ...
Download / Learn more Package Citations See dependency  
inventorize  
Inventory Analytics, Pricing and Markdowns
Simulate inventory policies with and without forecasting, facilitate inventory analysis calculations ...
Download / Learn more Package Citations See dependency  
RCALI  
Calculation of the Integrated Flow of Particles Between Polygons
Calculate the flow of particles between polygons by two integration methods: integration by a cubat ...
Download / Learn more Package Citations See dependency  
ggtrace  
Trace and Highlight Groups of Data Points
Provides 'ggplot2' geoms that allow groups of data points to be outlined or highlighted for emphasi ...
Download / Learn more Package Citations See dependency  
UnitStat  
Performs Unit Root Test Statistics
A test to understand the stability of the underlying stochastic data. Helps the user’s understand ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA