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immunogenetr  

A Comprehensive Toolkit for Clinical HLA Informatics
View on CRAN: Click here


Download and install immunogenetr package within the R console
Install from CRAN:
install.packages("immunogenetr")

Install from Github:
library("remotes")
install_github("cran/immunogenetr")

Install by package version:
library("remotes")
install_version("immunogenetr", "0.1.0")



Attach the package and use:
library("immunogenetr")
Maintained by
Nicholas Brown
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-03-24
Latest Update: 2025-03-24
Description:
A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' <https://tidyverse.tidyverse.org/> principles and making use of genotype list string (GL string, Mack et al. (2023) <doi:10.1111/tan.15126>) for storing and computing HLA genotype data.Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string.
How to cite:
Nicholas Brown (2025). immunogenetr: A Comprehensive Toolkit for Clinical HLA Informatics. R package version 0.1.0, https://cran.r-project.org/web/packages/immunogenetr. Accessed 19 Apr. 2025.
Previous versions and publish date:
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Complete documentation for immunogenetr
Functions, R codes and Examples using the immunogenetr R package
Full immunogenetr package functions and examples
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