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geneviewer  

Gene Cluster Visualizations
View on CRAN: Click here


Download and install geneviewer package within the R console
Install from CRAN:
install.packages("geneviewer")

Install from Github:
library("remotes")
install_github("cran/geneviewer")

Install by package version:
library("remotes")
install_version("geneviewer", "0.1.10")



Attach the package and use:
library("geneviewer")
Maintained by
Niels van der Velden
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-01-10
Latest Update: 2025-01-10
Description:
Provides tools for plotting gene clusters and transcripts by importing data from GenBank, FASTA, and GFF files. It performs BLASTP and MUMmer alignments [Altschul et al. (1990) <doi:10.1016/S0022-2836(05)80360-2>; Delcher et al. (1999) <doi:10.1093/nar/27.11.2369>] and displays results on gene arrow maps. Extensive customization options are available, including legends, labels, annotations, scales, colors, tooltips, and more.
How to cite:
Niels van der Velden (2025). geneviewer: Gene Cluster Visualizations. R package version 0.1.10, https://cran.r-project.org/web/packages/geneviewer. Accessed 03 Feb. 2025.
Previous versions and publish date:
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Complete documentation for geneviewer
Functions, R codes and Examples using the geneviewer R package
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