R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
Seurat
View on CRAN: Click
here
Download and install Seurat package within the R console
Install from CRAN:
install.packages("Seurat")
Install from Github:
library("remotes")
install_github("cran/Seurat")
Install by package version:
library("remotes")
install_version("Seurat", "5.2.1")
Attach the package and use:
library("Seurat")
Maintained by
Rahul Satija
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-08-22
Latest Update: 2024-02-29
Description:
A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) , Macosko E, Basu A, Satija R, et al (2015) , Stuart T, Butler A, et al (2019) , and Hao, Hao, et al (2020) for more details.
How to cite:
Rahul Satija (2017). Seurat: Tools for Single Cell Genomics. R package version 5.2.1, https://cran.r-project.org/web/packages/Seurat. Accessed 25 Apr. 2025.
Previous versions and publish date:
2.0.1 (2017-08-22 16:57), 2.1.0 (2017-10-12 22:36), 2.2.0 (2018-01-10 22:46), 2.2.1 (2018-02-14 20:53), 2.3.0 (2018-03-23 09:49), 2.3.1 (2018-05-05 08:29), 2.3.2 (2018-06-12 18:09), 2.3.3 (2018-07-03 00:10), 2.3.4 (2018-07-20 10:14), 3.0.0 (2019-04-15 23:54), 3.0.1 (2019-05-16 18:21), 3.0.2 (2019-06-15 00:33), 3.1.0 (2019-08-20 23:40), 3.1.1 (2019-10-03 14:40), 3.1.2 (2019-12-12 23:20), 3.1.3 (2020-02-11 22:40), 3.1.4 (2020-02-26 20:00), 3.1.5 (2020-04-16 13:50), 3.2.0 (2020-07-16 06:30), 3.2.1 (2020-09-07 12:20), 3.2.2 (2020-09-26 06:30), 3.2.3 (2020-12-15 11:10), 4.0.0 (2021-01-30 01:00), 4.0.1 (2021-03-18 07:30), 4.0.2 (2021-05-21 00:00), 4.0.3 (2021-06-10 23:20), 4.0.4 (2021-08-20 21:10), 4.0.5 (2021-10-17 22:30), 4.0.6 (2021-12-16 18:00), 4.1.0 (2022-01-14 19:32), 4.1.1 (2022-05-02 07:40), 4.2.0 (2022-09-22 00:50), 4.2.1 (2022-11-08 01:00), 4.3.0.1 (2023-06-22 09:04), 4.3.0 (2022-11-19 00:30), 4.4.0 (2023-09-28 10:50), 5.0.0 (2023-11-04 06:30), 5.0.1 (2023-11-18 00:10), 5.0.2 (2024-02-29 01:20), 5.0.3 (2024-03-19 00:40), 5.1.0 (2024-05-10 19:23), 5.2.0 (2025-01-14 00:20), 5.2.1 (2025-01-24 07:50)
Other packages that cited Seurat R package
View Seurat citation profile
Other R packages that Seurat depends,
imports, suggests or enhances
Complete documentation for Seurat
Functions, R codes and Examples using
the Seurat R package
Some associated functions: AddAzimuthResults . AddAzimuthScores . AddModuleScore . AggregateExpression . AnchorSet-class . AnnotateAnchors . Assay-class . AugmentPlot . AutoPointSize . AverageExpression . BGTextColor . BarcodeInflectionsPlot . BuildClusterTree . CalcPerturbSig . CalculateBarcodeInflections . CaseMatch . CellCycleScoring . CellScatter . CellSelector . Cells . CellsByImage . CollapseEmbeddingOutliers . CollapseSpeciesExpressionMatrix . ColorDimSplit . CombinePlots . CreateSCTAssayObject . CustomDistance . CustomPalette . DEenrichRPlot . DietSeurat . DimHeatmap . DimPlot . DimReduc-class . DiscretePalette . DoHeatmap . DotPlot . ElbowPlot . ExpMean . ExpSD . ExpVar . FastRowScale . FeaturePlot . FeatureScatter . FilterSlideSeq . FindAllMarkers . FindClusters . FindConservedMarkers . FindIntegrationAnchors . FindMarkers . FindMultiModalNeighbors . FindNeighbors . FindSpatiallyVariableFeatures . FindSubCluster . FindTransferAnchors . FindVariableFeatures . FoldChange . GetAssay . GetImage . GetIntegrationData . GetResidual . GetTissueCoordinates . GetTransferPredictions . Graph-class . GroupCorrelation . GroupCorrelationPlot . HTODemux . HTOHeatmap . HVFInfo.SCTAssay . HoverLocator . IFeaturePlot . ISpatialDimPlot . ISpatialFeaturePlot . ImageDimPlot . ImageFeaturePlot . IntegrateData . IntegrateEmbeddings . IntegrationAnchorSet-class . IntegrationData-class . JackStraw . JackStrawData-class . JackStrawPlot . L2CCA . L2Dim . LabelClusters . LabelPoints . LinkedPlots . Load10X_Spatial . LoadAnnoyIndex . LoadSTARmap . LocalStruct . LogNormalize . LogVMR . MULTIseqDemux . MapQuery . MappingScore . MetaFeature . MinMax . MixingMetric . MixscapeHeatmap . MixscapeLDA . ModalityWeights-class . NNPlot . Neighbor-class . NormalizeData . PCASigGenes . PercentAbove . PercentageFeatureSet . PlotClusterTree . PlotPerturbScore . PolyDimPlot . PolyFeaturePlot . PredictAssay . PrepLDA . PrepSCTFindMarkers . PrepSCTIntegration . ProjectDim . ProjectUMAP . Radius . Read10X . Read10X_Image . Read10X_h5 . ReadAkoya . ReadMtx . ReadNanostring . ReadParseBio . ReadSTARsolo . ReadSlideSeq . ReadVitessce . ReadVizgen . ReadXenium . RegroupIdents . RelativeCounts . RenameCells . RidgePlot . RunCCA . RunICA . RunLDA . RunMarkVario . RunMixscape . RunMoransI . RunPCA . RunSLSI . RunSPCA . RunTSNE . RunUMAP . SCTAssay-class . SCTResults . SCTransform . STARmap-class . SampleUMI . SaveAnnoyIndex . ScaleData . ScaleFactors . ScoreJackStraw . SelectIntegrationFeatures . SetIntegrationData . SetQuantile . Seurat-class . Seurat-package . SeuratCommand-class . SeuratTheme . SingleCorPlot . SingleDimPlot . SingleExIPlot . SingleImageMap . SingleImagePlot . SingleRasterMap . SingleSpatialPlot . SlideSeq-class . SpatialImage-class . SpatialPlot . SplitObject . SubsetByBarcodeInflections . TopCells . TopFeatures . TopNeighbors . TransferAnchorSet-class . TransferData . UpdateSCTAssays . UpdateSymbolList . VariableFeaturePlot . VisiumV1-class . VizDimLoadings . VlnPlot . as.CellDataSet . as.Seurat . as.SingleCellExperiment . as.sparse . cc.genes . cc.genes.updated.2019 . contrast-theory . fortify-Spatial . merge.SCTAssay . reexports . subset.AnchorSet .
Some associated R codes: RcppExports.R . clustering.R . convenience.R . data.R . differential_expression.R . dimensional_reduction.R . generics.R . integration.R . mixscape.R . objects.R . preprocessing.R . reexports.R . tree.R . utilities.R . visualization.R . zzz.R . Full Seurat package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
Rblpapi
An R Interface to 'Bloomberg' is provided via the 'Blp API'. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Dirk Eddelbuettel (view profile)
xesreadR
Read and write XES Files to create event log objects used by the 'bupaR' framework. XES (Extensible ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Gert Janssenswillen (view profile)
bender
R client for Bender Hyperparameters optimizer :
The R client allows you ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Valentin Thorey (view profile)
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
stepp
A method to explore the treatment-covariate interactions in survival or generalized linear model ( ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Wai-ki Yip (view profile)
fdacluster
Implementations of the k-means, hierarchical agglomerative and
DBSCAN clustering methods for functi ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Aymeric Stamm (view profile)
24,098
R Packages
207,311
Dependencies
65,069
Author Associations
24,099
Publication Badges
