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Rarefy  

Rarefaction Methods
View on CRAN: Click here


Download and install Rarefy package within the R console
Install from CRAN:
install.packages("Rarefy")

Install from Github:
library("remotes")
install_github("cran/Rarefy")

Install by package version:
library("remotes")
install_version("Rarefy", "1.1.1")



Attach the package and use:
library("Rarefy")
Maintained by
Elisa Thouverai
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-05-27
Latest Update: 2023-08-29
Description:
Includes functions for the calculation of spatially and non-spatially explicit rarefaction curves using different indices of taxonomic, functional and phylogenetic diversity. The user can also rarefy any biodiversity metric as provided by a self-written function (or an already existent one) that gives as output a vector with the values of a certain index of biodiversity calculated per plot (Ricotta, C., Acosta, A., Bacaro, G., Carboni, M., Chiarucci, A., Rocchini, D., Pavoine, S. (2019) ; Bacaro, G., Altobelli, A., Cameletti, M., Ciccarelli, D., Martellos, S., Palmer, M. W.,
How to cite:
Elisa Thouverai (2020). Rarefy: Rarefaction Methods. R package version 1.1.1, https://cran.r-project.org/web/packages/Rarefy. Accessed 16 Jun. 2025.
Previous versions and publish date:
1.0 (2020-05-27 12:30), 1.1.1 (2023-07-06 15:13), 1.1 (2021-03-12 00:10)
Other packages that cited Rarefy R package
View Rarefy citation profile
Other R packages that Rarefy depends, imports, suggests or enhances
Functions, R codes and Examples using the Rarefy R package
Some associated functions: directionalSAC . duneFVG . duneFVG.tr8 . duneFVG.xy . rao_permuted . rare_alpha . rare_beta . rare_phylo . rarexpected_fun . ser_functional . 
Some associated R codes: directionalSAC.R . rao_permuted.R . rare_alpha.R . rare_beta.R . rare_phylo.R . rarexpected_fun.R . ser_functional.R . ser_phylo.R .  Full Rarefy package functions and examples
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