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Qploidy  

Estimation of Ploidy and Detection of Aneuploidy Using Genotyping Data
View on CRAN: Click here


Download and install Qploidy package within the R console
Install from CRAN:
install.packages("Qploidy")

Install from Github:
library("remotes")
install_github("cran/Qploidy")

Install by package version:
library("remotes")
install_version("Qploidy", "1.0.1")



Attach the package and use:
library("Qploidy")
Maintained by
Cristiane Taniguti
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-05-01
Latest Update: 2025-05-01
Description:
Provides functions for estimating ploidy levels and detecting aneuploidy in individuals using allele intensities or allele count data from high-throughput genotyping platforms, including single nucleotide polymorphism (SNP) arrays and sequencing-based technologies. Implements an extended version of the 'PennCNV' signal standardization method by Wang et al. (2007) <doi:10.1101/gr.6861907> for higher ploidy levels. Computes B-allele frequencies (BAF), z-scores, and identifies copy number variation patterns.
How to cite:
Cristiane Taniguti (2025). Qploidy: Estimation of Ploidy and Detection of Aneuploidy Using Genotyping Data. R package version 1.0.1, https://cran.r-project.org/web/packages/Qploidy. Accessed 08 May. 2025.
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Full Qploidy package functions and examples
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