Other packages > Find by keyword >

PLNmodels  

Poisson Lognormal Models
View on CRAN: Click here


Download and install PLNmodels package within the R console
Install from CRAN:
install.packages("PLNmodels")

Install from Github:
library("remotes")
install_github("cran/PLNmodels")

Install by package version:
library("remotes")
install_version("PLNmodels", "1.2.0")



Attach the package and use:
library("PLNmodels")
Maintained by
Julien Chiquet
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-05-17
Latest Update: 2024-03-05
Description:
The Poisson-lognormal model and variants (Chiquet, Mariadassou and Robin, 2021 ) can be used for a variety of multivariate problems when count data are at play, including principal component analysis for count data, discriminant analysis, model-based clustering and network inference. Implements variational algorithms to fit such models accompanied with a set of functions for visualization and diagnostic.
How to cite:
Julien Chiquet (2019). PLNmodels: Poisson Lognormal Models. R package version 1.2.0, https://cran.r-project.org/web/packages/PLNmodels. Accessed 21 Feb. 2025.
Previous versions and publish date:
0.9.2 (2019-05-17 17:20), 0.9.3 (2019-12-05 15:00), 0.9.4 (2020-01-14 11:00), 0.9.5 (2020-01-27 22:10), 0.10.5 (2020-06-16 17:20), 0.10.6 (2020-06-22 11:50), 0.11.4 (2021-03-16 17:10), 0.11.5 (2022-01-20 23:42), 0.11.6 (2022-02-01 17:00), 0.11.7 (2022-08-25 12:32), 1.0.0 (2023-01-06 14:20), 1.0.1 (2023-02-12 15:42), 1.0.2 (2023-06-21 10:30), 1.0.3 (2023-07-01 20:40), 1.0.4 (2023-08-24 17:10), 1.1.0 (2024-01-08 19:30)
Other packages that cited PLNmodels R package
View PLNmodels citation profile
Other R packages that PLNmodels depends, imports, suggests or enhances
Complete documentation for PLNmodels
Functions, R codes and Examples using the PLNmodels R package
Some associated functions: PLN . PLNLDA . PLNLDA_param . PLNLDAfit . PLNLDAfit_diagonal . PLNPCA . PLNPCA_param . PLNPCAfamily . PLNPCAfit . PLN_param . PLNfamily . PLNfit . PLNfit_diagonal . PLNfit_fixedcov . PLNfit_spherical . PLNmixture . PLNmixture_param . PLNmixturefamily . PLNmixturefit . PLNmodels . PLNnetwork . PLNnetwork_param . PLNnetworkfamily . PLNnetworkfit . barents . coef.PLNLDAfit . coef.PLNfit . coef.PLNmixturefit . coefficient_path . compute_offset . extract_probs . fitted.PLNfit . fitted.PLNmixturefit . getBestModel . getModel . mollusk . oaks . pipe . plot.PLNLDAfit . plot.PLNPCAfamily . plot.PLNPCAfit . plot.PLNfamily . plot.PLNmixturefamily . plot.PLNmixturefit . plot.PLNnetworkfamily . plot.PLNnetworkfit . predict.PLNLDAfit . predict.PLNfit . predict.PLNmixturefit . predict_cond . prepare_data . rPLN . sigma.PLNfit . sigma.PLNmixturefit . stability_selection . standard_error . trichoptera . vcov.PLNfit . 
Some associated R codes: PLN.R . PLNLDA.R . PLNLDAfit-S3methods.R . PLNLDAfit-class.R . PLNPCA.R . PLNPCAfamily-S3methods.R . PLNPCAfamily-class.R . PLNPCAfit-S3methods.R . PLNPCAfit-class.R . PLNfamily-S3methods.R . PLNfamily-class.R . PLNfit-S3methods.R . PLNfit-class.R . PLNmixture.R . PLNmixturefamily-S3methods.R . PLNmixturefamily-class.R . PLNmixturefit-S3methods.R . PLNmixturefit-class.R . PLNmodels-package.R . PLNnetwork.R . PLNnetworkfamily-S3methods.R . PLNnetworkfamily-class.R . PLNnetworkfit-S3methods.R . PLNnetworkfit-class.R . RcppExports.R . barents.R . import_utils.R . mollusk.R . oaks.R . plot_utils.R . trichoptera.R . utils-pipe.R . utils.R . zzz.R .  Full PLNmodels package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

gorpiper  
GORpipe Tool for R
R library for executing GOR queries using local GORpipe. ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
GEint  
Misspecified Models for Gene-Environment Interaction
The first major functionality is to compute the bias in misspecified linear gene-environment interac ...
Download / Learn more Package Citations See dependency  
BTdecayLasso  
Bradley-Terry Model with Exponential Time Decayed Log-Likelihood and Adaptive Lasso
We utilize the Bradley-Terry Model to estimate the abilities of teams using paired comparison data. ...
Download / Learn more Package Citations See dependency  
PCLassoReg  
Group Regression Models for Risk Protein Complex Identification
Two protein complex-based group regression models (PCLasso and PCLasso2) for risk protein complex id ...
Download / Learn more Package Citations See dependency  
divDyn  
Diversity Dynamics using Fossil Sampling Data
Functions to describe sampling and diversity dynamics of fossil occurrence datasets (e.g. from the P ...
Download / Learn more Package Citations See dependency  

23,712

R Packages

205,795

Dependencies

64,332

Author Associations

23,713

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA