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GeneNMF  

Non-Negative Matrix Factorization for Single-Cell Omics
View on CRAN: Click here


Download and install GeneNMF package within the R console
Install from CRAN:
install.packages("GeneNMF")

Install from Github:
library("remotes")
install_github("cran/GeneNMF")

Install by package version:
library("remotes")
install_version("GeneNMF", "0.9.2")



Attach the package and use:
library("GeneNMF")
Maintained by
Massimo Andreatta
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-02-29
Latest Update: 2025-04-24
Description:
A collection of methods to extract gene programs from single-cell gene expression data using non-negative matrix factorization (NMF). 'GeneNMF' contains functions to directly interact with the 'Seurat' toolkit and derive interpretable gene program signatures.
How to cite:
Massimo Andreatta (2024). GeneNMF: Non-Negative Matrix Factorization for Single-Cell Omics. R package version 0.9.2, https://cran.r-project.org/web/packages/GeneNMF. Accessed 15 Jun. 2026.
Previous versions and publish date:
0.4.0 (2024-02-29 13:22), 0.6.0 (2024-07-22 10:30), 0.6.2 (2024-11-12 14:20), 0.8.0 (2025-04-24 14:40)
Other packages that cited GeneNMF R package
View GeneNMF citation profile
Other R packages that GeneNMF depends, imports, suggests or enhances
Complete documentation for GeneNMF
Functions, R codes and Examples using the GeneNMF R package
Full GeneNMF package functions and examples
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