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GAPR  

Generalized Association Plots
View on CRAN: Click here


Download and install GAPR package within the R console
Install from CRAN:
install.packages("GAPR")

Install from Github:
library("remotes")
install_github("cran/GAPR")

Install by package version:
library("remotes")
install_version("GAPR", "0.1.0")



Attach the package and use:
library("GAPR")
Maintained by
Shu-Yu Lin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-05-27
Latest Update: 2025-05-27
Description:
Provides a comprehensive framework for visualizing associations and interaction structures in matrix-formatted data using Generalized Association Plots (GAP). The package implements multiple proximity computation methods (e.g., correlation, distance metrics), ordering techniques including hierarchical clustering (HCT) and Rank-2-Ellipse (R2E) seriation, and optional flipping strategies to enhance visual symmetry. It supports a variety of covariate-based color annotations, allows flexible customization of layout and output, and is suitable for analyzing multivariate data across domains such as social sciences, genomics, and medical research. The method is based on Generalized Association Plots introduced by Chen (2002) <https://www3.stat.sinica.edu.tw/statistica/J12N1/J12N11/J12N11.html> and further extended by Wu, Tien, and Chen (2010) <doi:10.1016/j.csda.2008.09.029>.
How to cite:
Shu-Yu Lin (2025). GAPR: Generalized Association Plots. R package version 0.1.0, https://cran.r-project.org/web/packages/GAPR. Accessed 12 Jun. 2025.
Previous versions and publish date:
0.1.0 (2025-05-27 10:00)
Other packages that cited GAPR R package
View GAPR citation profile
Other R packages that GAPR depends, imports, suggests or enhances
Complete documentation for GAPR
Functions, R codes and Examples using the GAPR R package
Full GAPR package functions and examples
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