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DEploid.utils
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Download and install DEploid.utils package within the R console
Install from CRAN:
install.packages("DEploid.utils")
Install from Github:
library("remotes")
install_github("cran/DEploid.utils")
Install by package version:
library("remotes")
install_version("DEploid.utils", "0.0.1")
Attach the package and use:
library("DEploid.utils")
Maintained by
Joe Zhu
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-12-19
Latest Update: 2024-12-19
Description:
'DEploid' (Zhu et.al. 2018 <doi:10.1093/bioinformatics/btx530>) is designed for deconvoluting mixed genomes with unknown proportions. Traditional phasing programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting. This package provides R functions to support data analysis and results interpretation.
How to cite:
Joe Zhu (2024). DEploid.utils: 'DEploid' Data Analysis and Results Interpretation. R package version 0.0.1, https://cran.r-project.org/web/packages/DEploid.utils. Accessed 05 Jan. 2025.
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